STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59286.1KEGG: drm:Dred_2556 ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, periplasmic component. (366 aa)    
Predicted Functional Partners:
AEG59285.1
PFAM: FAD dependent oxidoreductase; KEGG: drm:Dred_2557 dehydrogenase (flavoproteins).
 
     0.842
AEG58495.1
SMART: protein phosphatase 2C domain protein; TIGRFAM: stage II sporulation protein E; KEGG: drm:Dred_0124 phosphoprotein phosphatase; PFAM: Stage II sporulation protein E.
  
     0.684
AEG61301.1
KEGG: drm:Dred_1056 hypothetical protein; TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase.
  
     0.659
AEG61630.1
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: drm:Dred_0468 small acid-soluble spore protein, alpha/beta type.
  
     0.654
AEG59423.1
Sporulation protein YqfD; KEGG: drm:Dred_2485 putative stage IV sporulation YqfD; TIGRFAM: sporulation protein YqfD; PFAM: stage IV sporulation YqfD.
  
     0.614
AEG61295.1
KEGG: drm:Dred_1062 hypothetical protein.
  
     0.609
AEG59422.1
KEGG: drm:Dred_2486 hypothetical protein.
  
     0.607
AEG61297.1
KEGG: drm:Dred_1060 hypothetical protein; TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE.
  
     0.602
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.600
AEG61640.1
Stage II sporulation protein R; KEGG: drm:Dred_0458 pro-sigma-E processing factor spoIIR; TIGRFAM: stage II sporulation protein R; PFAM: Sporulation stage II protein R.
  
     0.569
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.