STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59340.1PFAM: integrase family protein; KEGG: tit:Thit_1365 integrase family protein; Belongs to the 'phage' integrase family. (411 aa)    
Predicted Functional Partners:
xerD
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
  
 0.658
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
  
 0.647
AEG61959.1
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: drm:Dred_0967 phage integrase family protein; Belongs to the 'phage' integrase family.
  
  
 0.609
AEG59341.1
PFAM: protein of unknown function DUF955; KEGG: cbi:CLJ_B1360 phage protein.
  
    0.581
AEG59342.1
SMART: helix-turn-helix domain protein; KEGG: bai:BAA_3851 hypothetical protein.
  
    0.548
AEG61835.1
KEGG: drm:Dred_3081 phosphoribosyltransferase.
   
    0.465
AEG58990.1
PFAM: integrase family protein; KEGG: dae:Dtox_1846 integrase family protein; Belongs to the 'phage' integrase family.
  
  
 0.456
AEG61076.1
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: drm:Dred_0863 phage integrase domain/SAM domain-containing protein; Belongs to the 'phage' integrase family.
  
  
 0.456
AEG61167.1
PFAM: Prephenate dehydrogenase; KEGG: drm:Dred_1150 prephenate dehydrogenase.
  
    0.427
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
   
    0.412
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.