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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59344.1Phage regulatory protein, Rha family; KEGG: hmo:HM1_2938 hypothetical protein; TIGRFAM: phage regulatory protein, Rha family; PFAM: Phage regulatory protein, Rha-like. (223 aa)    
Predicted Functional Partners:
AEG59343.1
SMART: helix-turn-helix domain protein; KEGG: bai:BAA_3850 hypothetical protein.
       0.777
AEG59345.1
Hypothetical protein; KEGG: tit:Thit_1409 DNA binding domain protein, excisionase family.
       0.718
AEG59346.1
KEGG: cju:C8J_0029 hypothetical protein.
       0.672
AEG59347.1
PFAM: Sporulation initiation factor Spo0A; KEGG: hmo:HM1_0304 stage 0 sporulation protein A.
       0.672
AEG61777.1
KEGG: thx:Thet_1678 rRNA biogenesis protein rrp5.
 
     0.521
AEG59342.1
SMART: helix-turn-helix domain protein; KEGG: bai:BAA_3851 hypothetical protein.
       0.457
AEG59341.1
PFAM: protein of unknown function DUF955; KEGG: cbi:CLJ_B1360 phage protein.
       0.447
AEG59357.1
PFAM: virulence-associated E family protein; KEGG: drm:Dred_1196 virulence-associated E family protein.
 
     0.425
AEG59348.1
KEGG: apa:APP7_0464 hypothetical protein.
       0.405
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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