STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59448.1PFAM: protein of unknown function DUF324; KEGG: rca:Rcas_4242 hypothetical protein. (452 aa)    
Predicted Functional Partners:
AEG59450.1
KEGG: rca:Rcas_4240 CRISPR-associated RAMP Cmr4 family protein family protein; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324.
 
 
 
 0.990
AEG59449.1
TIGRFAM: CRISPR-associated protein, Csx11 family; KEGG: cag:Cagg_3827 CRISPR-associated protein, Csx11 family.
 
     0.950
AEG59451.1
KEGG: rca:Rcas_4239 hypothetical protein.
 
     0.942
AEG59452.1
PFAM: protein of unknown function DUF324; KEGG: rca:Rcas_4238 hypothetical protein.
 
     0.942
AEG59447.1
CRISPR-associated RAMP protein, Cmr1 family; KEGG: pth:PTH_0707 hypothetical protein; manually curated; TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family.
   
 
 0.914
AEG61725.1
KEGG: cbb:CLD_2403 hypothetical protein.
   
 
 0.880
AEG59454.1
KEGG: pth:PTH_0397 cytotoxic translational repressor.
 
     0.572
AEG59453.1
KEGG: pth:PTH_0396 hypothetical protein; TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein.
 
     0.562
AEG58663.1
KEGG: pth:PTH_1557 hypothetical protein.
  
     0.477
AEG59226.1
PFAM: Radical SAM domain protein; KEGG: pth:PTH_0885 arylsulfatase regulator.
  
     0.441
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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