STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59589.1Phage protein; KEGG: cdl:CDR20291_1441 phage protein. (434 aa)    
Predicted Functional Partners:
AEG59596.1
KEGG: cpy:Cphy_2951 phage protein.
 
   0.983
AEG59598.1
KEGG: cpy:Cphy_2949 hypothetical protein.
 
 
 0.969
AEG59597.1
PFAM: Baseplate J family protein; KEGG: cdf:CD2900 putative phage tail protein.
 
 
 0.956
AEG59587.1
KEGG: cdf:CD2911 phage protein.
 
     0.955
AEG59590.1
PFAM: XkdM protein, phage-like element PBSX; KEGG: cdf:CD2909 phage protein.
 
    0.953
AEG61697.1
KEGG: dae:Dtox_4249 hypothetical protein.
 
   0.946
AEG59593.1
KEGG: cpy:Cphy_2954 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
 
 
 0.945
AEG59591.1
PFAM: XkdN-like protein; KEGG: cdl:CDR20291_1444 phage protein.
 
    0.944
AEG60010.1
PFAM: GPW/gp25 family protein; KEGG: gvi:gll1413 hypothetical protein.
  
 
 0.928
AEG60009.1
PFAM: Baseplate J family protein; KEGG: ckr:CKR_2875 hypothetical protein.
 
 
 0.926
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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