STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59590.1PFAM: XkdM protein, phage-like element PBSX; KEGG: cdf:CD2909 phage protein. (155 aa)    
Predicted Functional Partners:
AEG59591.1
PFAM: XkdN-like protein; KEGG: cdl:CDR20291_1444 phage protein.
 
    0.966
AEG59587.1
KEGG: cdf:CD2911 phage protein.
 
     0.958
AEG59589.1
Phage protein; KEGG: cdl:CDR20291_1441 phage protein.
 
    0.953
AEG59596.1
KEGG: cpy:Cphy_2951 phage protein.
 
    0.923
AEG59595.1
KEGG: str:Sterm_1444 hypothetical protein.
 
    0.904
AEG59598.1
KEGG: cpy:Cphy_2949 hypothetical protein.
 
    0.903
AEG59594.1
KEGG: cdl:CDR20291_1451 putative phage cell wall hydrolase.
 
     0.900
AEG59593.1
KEGG: cpy:Cphy_2954 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
 
    0.888
AEG59597.1
PFAM: Baseplate J family protein; KEGG: cdf:CD2900 putative phage tail protein.
 
    0.888
AEG59592.1
Hypothetical protein; KEGG: lsp:Bsph_1782 putative phage tail tape measure protein.
 
     0.887
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.