STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59718.1PFAM: regulatory protein TetR; KEGG: slp:Slip_2342 transcriptional regulator, TetR family. (206 aa)    
Predicted Functional Partners:
AEG59719.1
PFAM: secretion protein HlyD family protein; KEGG: slp:Slip_2341 secretion protein HlyD family protein.
 
     0.808
AEG59720.1
KEGG: slp:Slip_2340 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1.
 
     0.792
AEG59721.1
PFAM: UspA domain-containing protein; KEGG: bay:RBAM_036340 YxiE.
  
    0.605
AEG61504.1
PFAM: regulatory protein TetR; KEGG: dae:Dtox_2650 transcriptional regulator, TetR family.
  
     0.519
AEG60301.1
PFAM: NLP/P60 protein; KEGG: bpf:BpOF4_12040 C40 family peptidase.
  
     0.517
AEG61718.1
PFAM: regulatory protein TetR; KEGG: tjr:TherJR_0157 transcriptional regulator, TetR family.
  
     0.459
AEG60300.1
PFAM: protein of unknown function DUF867; KEGG: dsy:DSY4392 hypothetical protein.
  
     0.440
AEG59724.1
KEGG: bja:bll5958 hypothetical protein.
 
   
 0.434
AEG61249.1
KEGG: cbf:CLI_1113 hypothetical protein.
  
     0.407
AEG59916.1
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; response regulator receiver; Hpt domain protein; KEGG: drm:Dred_2145 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
      
 0.400
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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