STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59765.1KEGG: cbf:CLI_0804 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (322 aa)    
Predicted Functional Partners:
AEG58360.1
Helix-turn-helix- domain containing protein AraC type; KEGG: bss:BSUW23_01130 putative AraC/XylS family, cupin family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
     0.620
AEG59805.1
KEGG: cbh:CLC_1080 hypothetical protein.
  
     0.545
AEG59861.1
PFAM: ATP-binding region ATPase domain protein; KEGG: cpy:Cphy_1601 signal transduction histidine kinase regulating citrate/malate metabolism.
  
    0.499
AEG60844.1
PFAM: protein of unknown function DUF107; KEGG: dhd:Dhaf_3316 protein of unknown function DUF107.
  
     0.456
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.447
AEG59764.1
PFAM: regulatory protein MerR; KEGG: afl:Aflv_0173 transcriptional regulator (MerR family).
       0.431
AEG58796.1
PFAM: TfoX domain-containing protein; KEGG: mru:mru_1848 TfoX C-terminal domain-containing protein.
  
     0.429
AEG60843.1
KEGG: dhd:Dhaf_3314 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein.
  
    0.429
AEG59916.1
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; response regulator receiver; Hpt domain protein; KEGG: drm:Dred_2145 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
   
  
 0.415
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.