STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59864.1PFAM: nitroreductase; KEGG: clj:CLJU_c35240 putative nitroreductase. (187 aa)    
Predicted Functional Partners:
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.638
AEG59865.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: cby:CLM_1318 UAA transporter family.
       0.570
AEG58846.1
PFAM: AMP-dependent synthetase and ligase; KEGG: drm:Dred_2963 AMP-dependent synthetase and ligase.
   
 
 0.422
AEG59332.1
PFAM: AMP-dependent synthetase and ligase; KEGG: pth:PTH_0838 acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
   
 
 0.422
AEG59106.1
KEGG: drm:Dred_2805 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
     
 0.416
AEG59613.1
PFAM: Abortive infection protein; KEGG: drm:Dred_2327 abortive infection protein.
  
  
 0.413
AEG60889.1
KEGG: drm:Dred_1355 hypothetical protein.
   
 
 0.407
AEG59866.1
PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cbe:Cbei_0517 LysR family transcriptional regulator.
       0.403
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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