STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59875.1N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; copper amine oxidase-like domain-containing protein; KEGG: hmo:HM1_2806 N-acetylmuramoyl-L-alanine amidase, putative; SMART: cell wall hydrolase/autolysin. (241 aa)    
Predicted Functional Partners:
AEG61885.1
KEGG: drm:Dred_3147 SpoIID/LytB domain-containing protein; TIGRFAM: stage II sporulation protein D; SpoIID/LytB domain protein; PFAM: Stage II sporulation protein D.
  
 0.617
AEG59013.1
PFAM: Rhomboid family protein; KEGG: drm:Dred_2900 rhomboid family protein.
  
   0.525
AEG61460.1
PFAM: copper amine oxidase-like domain-containing protein; KEGG: drm:Dred_1644 copper amine oxidase domain-containing protein.
 
      0.404
AEG61363.1
KEGG: dhd:Dhaf_2806 hypothetical protein.
    
   0.400
AEG61399.1
KEGG: clj:CLJU_c15710 hypothetical protein.
    
   0.400
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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