STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60008.1KEGG: gym:GYMC10_5391 hypothetical protein. (183 aa)    
Predicted Functional Partners:
AEG60010.1
PFAM: GPW/gp25 family protein; KEGG: gvi:gll1413 hypothetical protein.
 
 
 0.992
AEG60012.1
KEGG: bgl:bglu_1g20340 hypothetical protein.
 
  
 0.975
AEG61697.1
KEGG: dae:Dtox_4249 hypothetical protein.
 
 
 0.965
AEG60009.1
PFAM: Baseplate J family protein; KEGG: ckr:CKR_2875 hypothetical protein.
 
    0.956
AEG61705.1
KEGG: dae:Dtox_4241 hypothetical protein.
 
 
 0.955
AEG60007.1
KEGG: ckr:CKR_2872 hypothetical protein.
 
  
 0.939
AEG59596.1
KEGG: cpy:Cphy_2951 phage protein.
 
 
 0.912
AEG60013.1
KEGG: dhd:Dhaf_1417 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
 
  
 0.903
AEG59589.1
Phage protein; KEGG: cdl:CDR20291_1441 phage protein.
 
 
 0.886
AEG60014.1
KEGG: afl:Aflv_0673 phage-related tail protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region.
 
  
 0.864
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.