STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60013.1KEGG: dhd:Dhaf_1417 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM. (190 aa)    
Predicted Functional Partners:
AEG60010.1
PFAM: GPW/gp25 family protein; KEGG: gvi:gll1413 hypothetical protein.
 
 
 0.988
AEG60012.1
KEGG: bgl:bglu_1g20340 hypothetical protein.
 
   0.984
AEG60008.1
KEGG: gym:GYMC10_5391 hypothetical protein.
 
 
 0.970
AEG60009.1
PFAM: Baseplate J family protein; KEGG: ckr:CKR_2875 hypothetical protein.
 
 
 0.967
AEG60014.1
KEGG: afl:Aflv_0673 phage-related tail protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region.
 
   
 0.935
AEG60019.1
KEGG: cfl:Cfla_2260 tail sheath protein.
 
 
 0.930
AEG60011.1
Hypothetical protein; KEGG: swi:Swit_2568 ribokinase-like domain-containing protein.
       0.782
AEG60025.1
KEGG: npu:Npun_R2610 SPP1 family phage head morphogenesis protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7.
 
     0.777
AEG60021.1
KEGG: btr:Btr_2621 hypothetical protein.
  
     0.772
AEG60026.1
KEGG: dap:Dacet_2219 hypothetical protein.
  
     0.772
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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