STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60039.1Hypothetical protein; KEGG: nhl:Nhal_3406 Appr-1-p processing domain protein. (129 aa)    
Predicted Functional Partners:
AEG60038.1
Manually curated; PFAM: IstB domain protein ATP-binding protein; KEGG: dae:Dtox_4220 IstB domain protein ATP-binding protein; SMART: AAA ATPase.
       0.773
AEG60040.1
Hypothetical protein; KEGG: dvi:Dvir_GJ10692 GJ10692 gene product from transcript GJ10692-RA.
       0.737
AEG60041.1
Hypothetical protein; KEGG: tva:TVAG_174520 SNF7 family protein.
       0.473
AEG60042.1
Helix-turn-helix domain protein; KEGG: amt:Amet_4393 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: AAA ATPase.
       0.464
AEG60043.1
PFAM: Transposase-like Mu; Integrase catalytic region; KEGG: amt:Amet_0388 transposase.
       0.440
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.