STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60048.1PFAM: SpoOM family protein; KEGG: drm:Dred_0420 SpoOM family protein. (316 aa)    
Predicted Functional Partners:
AEG60047.1
Regulatory protein MerR; KEGG: drm:Dred_0419 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
 
     0.758
htpX
PFAM: peptidase M48 Ste24p; KEGG: drm:Dred_0421 peptidase M48, Ste24p; Belongs to the peptidase M48B family.
       0.686
AEG60046.1
PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: drm:Dred_1580 hypothetical protein.
 
     0.585
AEG58843.1
PFAM: TrkA-C domain protein; KEGG: dae:Dtox_3238 TrkA-C domain protein.
  
     0.525
AEG60940.1
PFAM: hypothetical protein; KEGG: drm:Dred_1314 hypothetical protein.
  
     0.519
AEG61213.1
PFAM: CRISPR-associated protein TM1802; KEGG: drm:Dred_0536 hypothetical protein.
  
     0.510
AEG60058.1
PFAM: AAA-4 family protein; KEGG: drm:Dred_2059 putative transcriptional regulator.
  
     0.502
AEG59259.1
PFAM: SMC domain protein; KEGG: drm:Dred_2570 SMC domain-containing protein.
  
     0.500
AEG58844.1
PFAM: sodium/hydrogen exchanger; KEGG: drm:Dred_1518 sodium/hydrogen exchanger.
  
     0.486
AEG61121.1
PFAM: Ion transport 2 domain protein; KEGG: drm:Dred_1173 ion transport 2 domain-containing protein.
  
     0.478
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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