STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60167.1Spore cortex-lytic enzyme; KEGG: drm:Dred_1949 cell wall hydrolase, SleB; TIGRFAM: spore cortex-lytic enzyme; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding domain 1 protein. (252 aa)    
Predicted Functional Partners:
AEG61931.1
TIGRFAM: germination protein YpeB; KEGG: drm:Dred_3194 peptidase.
 
  
 0.845
AEG58406.1
KEGG: drm:Dred_0053 spore germination B3 GerAC family protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
    0.674
AEG60600.1
KEGG: dae:Dtox_0584 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
    0.673
AEG60805.1
KEGG: drm:Dred_1464 stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
  
  
 0.650
AEG61229.1
Manually curated; TIGRFAM: stage V sporulation protein AD; KEGG: drm:Dred_1107 stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
  
  
 0.616
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.599
AEG60804.1
KEGG: drm:Dred_1465 SpoVA protein; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein.
  
  
 0.592
AEG61540.1
Peptidase U4 sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.580
AEG61181.1
Manually curated; TIGRFAM: sporulation protein YtfJ; KEGG: drm:Dred_1138 hypothetical protein; PFAM: Sporulation protein YtfJ.
  
  
 0.574
AEG60598.1
KEGG: adg:Adeg_0296 spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
  
  
 0.570
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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