STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60258.1TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; KEGG: drm:Dred_1872 fumarate hydratase; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region. (299 aa)    
Predicted Functional Partners:
AEG60259.1
KEGG: drm:Dred_1871 tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region.
 
 0.999
AEG60263.1
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: drm:Dred_1868 succinate dehydrogenase iron-sulfur subunit.
  
 
 0.973
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 
 0.972
AEG60261.1
TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: drm:Dred_1870 succinate dehydrogenase/fumarate reductase cytochrome b subunit.
  
 
 0.963
AEG60262.1
TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; KEGG: drm:Dred_1869 succinate dehydrogenase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
  
 
 0.963
AEG58880.1
PFAM: malic protein NAD-binding; malic protein domain protein; amino acid-binding ACT domain protein; KEGG: drm:Dred_2955 malate dehydrogenase.
 
 
 0.959
AEG61407.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; ferredoxin; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: toc:Toce_0243 FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
     
 0.817
argH
KEGG: drm:Dred_0278 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase.
    
 0.814
AEG58712.1
PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: drm:Dred_1113 formate dehydrogenase.
   
 
 0.807
AEG58713.1
Nitrate reductase; KEGG: drm:Dred_1114 formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.807
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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