STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Coexpression
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[Homology]
Score
AEG60325.1Regulatory protein MerR; KEGG: dhd:Dhaf_3149 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR. (253 aa)    
Predicted Functional Partners:
AEG60323.1
PFAM: ABC-2 type transporter; KEGG: dhd:Dhaf_3151 ABC-2 type transporter.
 
    0.926
AEG60324.1
KEGG: dhd:Dhaf_3150 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.902
AEG59916.1
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; response regulator receiver; Hpt domain protein; KEGG: drm:Dred_2145 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
   
 
 0.767
AEG59212.1
KEGG: cce:Ccel_2418 hypothetical protein.
  
  
 0.707
AEG58914.1
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bth:BT_1384 hypothetical protein.
  
    0.684
AEG59387.1
KEGG: ccb:Clocel_0464 transcriptional activator ligand binding domain-containing protein; PFAM: transcription activator effector binding; regulatory protein MerR; SMART: regulatory protein MerR.
  
     0.647
AEG60978.1
PFAM: Uncharacterised protein family UPF0066; KEGG: ckr:CKR_0280 hypothetical protein.
  
     0.561
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.514
AEG60771.1
TIGRFAM: Exosporium BclB-like; KEGG: aac:Aaci_2505 collagen triple helix repeat protein.
  
     0.511
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.507
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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