STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60341.1PFAM: protein of unknown function DUF6 transmembrane; KEGG: pca:Pcar_0941 hypothetical protein. (336 aa)    
Predicted Functional Partners:
AEG60340.1
KEGG: pca:Pcar_0942 hypothetical protein.
 
     0.947
cutC
Pyruvate formate-lyase PFL; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
 
     0.852
AEG60334.1
PFAM: microcompartments protein; KEGG: drm:Dred_3272 microcompartments protein.
 
     0.829
cutD
Glycyl-radical enzyme activating protein family; Catalyzes activation of the choline trimethylamine-lyase CutC under anaerobic conditions by generation of an organic free radical on a glycine residue, via an homolytic cleavage of S-adenosyl-L-methionine (SAM).
 
     0.780
AEG60336.1
KEGG: drm:Dred_3274 hypothetical protein.
 
     0.746
AEG60337.1
KEGG: drm:Dred_3275 hypothetical protein; Belongs to the EutP/PduV family.
 
     0.746
AEG60335.1
TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: drm:Dred_3273 ethanolamine utilization protein EutJ family protein.
 
     0.715
AEG60338.1
PFAM: microcompartments protein; KEGG: drm:Dred_3276 microcompartments protein.
 
     0.698
AEG60330.1
PFAM: Ethanolamine utilisation EutQ family protein; KEGG: drm:Dred_3268 ethanolamine utilisation EutQ family protein.
 
     0.646
AEG60333.1
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: drm:Dred_3271 ethanolamine utilization protein EutN/carboxysome structural protein CcmL.
 
     0.561
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.