STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60343.1PFAM: iron-containing alcohol dehydrogenase; KEGG: drm:Dred_3279 iron-containing alcohol dehydrogenase. (378 aa)    
Predicted Functional Partners:
AEG60344.1
KEGG: drm:Dred_3280 acetaldehyde dehydrogenase (acetylating); TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: Aldehyde Dehydrogenase.
  
 0.990
AEG60328.1
KEGG: drm:Dred_3266 acetaldehyde dehydrogenase (acetylating); TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: Aldehyde Dehydrogenase.
  
 0.969
AEG62035.1
KEGG: dhd:Dhaf_0190 hypothetical protein.
  
 0.955
cutC
Pyruvate formate-lyase PFL; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
  
  
 0.679
AEG60345.1
PFAM: microcompartments protein; KEGG: dhd:Dhaf_4907 microcompartments protein.
       0.597
cutD
Glycyl-radical enzyme activating protein family; Catalyzes activation of the choline trimethylamine-lyase CutC under anaerobic conditions by generation of an organic free radical on a glycine residue, via an homolytic cleavage of S-adenosyl-L-methionine (SAM).
  
  
 0.571
AEG60346.1
PFAM: microcompartments protein; KEGG: dhd:Dhaf_4908 microcompartments protein.
       0.530
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.505
AEG60341.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: pca:Pcar_0941 hypothetical protein.
  
    0.483
AEG60340.1
KEGG: pca:Pcar_0942 hypothetical protein.
       0.463
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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