Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEG60354.1KEGG: swo:Swol_0508 hypothetical protein. (265 aa)    
Predicted Functional Partners:
AEG60353.1
KEGG: swo:Swol_0509 hypothetical protein.
     0.869
AEG59904.1
KEGG: drm:Dred_2147 hypothetical protein.
   
   0.749
AEG60784.1
PFAM: Silent information regulator protein Sir2; KEGG: drm:Dred_2032 silent information regulator protein Sir2.
   
   0.749
AEG60352.1
Hypothetical protein; KEGG: cth:Cthe_0056 Ig-like, group 2.
       0.518
AEG60355.1
Hypothetical protein; KEGG: abu:Abu_0346 cytochrome c biogenesis protein.
       0.453
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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