Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEG60403.1PFAM: protein of unknown function DUF1980; KEGG: dae:Dtox_0337 protein of unknown function DUF1980. (279 aa)    
Predicted Functional Partners:
AEG60402.1
PFAM: permease; KEGG: dae:Dtox_0336 permease.
 
  
 0.980
AEG60404.1
KEGG: dae:Dtox_0339 hypothetical protein.
 
     0.816
AEG58342.1
KEGG: dae:Dtox_0495 hypothetical protein.
  
     0.527
AEG58527.1
KEGG: dae:Dtox_1632 hypothetical protein.
  
     0.509
AEG59499.1
KEGG: dae:Dtox_0663 hypothetical protein.
  
     0.486
AEG58520.1
Regulatory protein MarR; KEGG: cbi:CLJ_B1057 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.458
AEG60401.1
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cac:CA_C3602 HD superfamily hydrolase.
 
     0.443
AEG58528.1
KEGG: hmo:HM1_0417 hypothetical protein.
  
     0.417
AEG60290.1
PFAM: extracellular solute-binding protein family 1; KEGG: dae:Dtox_3447 molybdenum ABC transporter, periplasmic molybdate-binding protein.
  
     0.415
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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