STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60441.1SMART: Elongator protein 3/MiaB/NifB; KEGG: clj:CLJU_c22770 radical SAM domain-containing protein. (322 aa)    
Predicted Functional Partners:
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
 
 0.962
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 
0.908
AEG59899.1
Radical SAM domain protein; KEGG: drm:Dred_2151 biotin synthase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
     
  0.900
AEG58874.1
PFAM: aminotransferase class-III; KEGG: dvm:DvMF_0516 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.691
AEG60301.1
PFAM: NLP/P60 protein; KEGG: bpf:BpOF4_12040 C40 family peptidase.
  
     0.551
AEG61206.1
PFAM: copper amine oxidase-like domain-containing protein; KEGG: bbe:BBR47_12660 hypothetical protein.
  
     0.477
AEG61249.1
KEGG: cbf:CLI_1113 hypothetical protein.
  
     0.477
AEG60442.1
KEGG: gtn:GTNG_1424 hypothetical protein.
       0.462
AEG60498.1
PFAM: pentapeptide repeat protein; KEGG: cbh:CLC_0905 pentapeptide repeat-containing protein.
  
     0.446
AEG60214.1
PFAM: transcriptional regulator PadR family protein; KEGG: clj:CLJU_c22780 putative transcriptional regulator.
 
    0.444
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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