STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60446.1PFAM: cyclase family protein; KEGG: tle:Tlet_0260 cyclase family protein. (242 aa)    
Predicted Functional Partners:
AEG60448.1
PFAM: cyclase/dehydrase; KEGG: cpo:COPRO5265_0653 polyketide cyclase/dehydrase superfamily.
       0.687
AEG60447.1
PFAM: Radical SAM domain protein; KEGG: dal:Dalk_4338 radical SAM domain protein.
       0.686
AEG60452.1
Hypothetical protein; KEGG: cbt:CLH_0633 putative arylesterase.
 
     0.636
AEG60449.1
PFAM: NAD-dependent epimerase/dehydratase; KEGG: nde:NIDE0700 putative dihydroflavanol 4-reductase.
       0.560
AEG60450.1
KEGG: rci:LRC395 hypothetical protein.
       0.473
AEG60455.1
KEGG: stp:Strop_3246 hypothetical protein.
 
     0.459
AEG60451.1
PFAM: Methyltransferase type 11; KEGG: bpf:BpOF4_20064 SAM-dependent methyltransferase.
       0.429
AEG60453.1
KEGG: afl:Aflv_2139 3-oxoacyl-(acyl carrier protein) synthase II; PFAM: Beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.419
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.