STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60535.1TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; helix-turn-helix Fis-type; KEGG: drm:Dred_1719 sigma-54 dependent trancsriptional regulator; SMART: AAA ATPase. (582 aa)    
Predicted Functional Partners:
AEG61802.1
KEGG: drm:Dred_2992 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor.
 
   
 0.789
AEG60534.1
PFAM: Extracellular ligand-binding receptor; KEGG: drm:Dred_1720 extracellular ligand-binding receptor.
       0.541
AEG59916.1
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; response regulator receiver; Hpt domain protein; KEGG: drm:Dred_2145 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
     
 0.502
AEG60536.1
KEGG: drm:Dred_2236 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.431
AEG60537.1
KEGG: drm:Dred_2237 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.431
AEG60538.1
PFAM: inner-membrane translocator; KEGG: drm:Dred_2238 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.431
AEG60539.1
PFAM: inner-membrane translocator; KEGG: drm:Dred_2239 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.431
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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