STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60547.1TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: drm:Dred_1716 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (219 aa)    
Predicted Functional Partners:
AEG61828.1
PFAM: Transketolase domain-containing protein; KEGG: drm:Dred_3075 transketolase domain-containing protein.
 
 0.996
AEG61901.1
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; KEGG: drm:Dred_3163 RpiB/LacA/LacB family sugar-phosphate isomerase; PFAM: Ribose/galactose isomerase.
 
 
 0.971
xylB
Xylulokinase; KEGG: dtu:Dtur_0920 xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like.
 
 
 0.965
AEG61827.1
PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: drm:Dred_3074 transketolase, central region.
 
 
 0.954
rsgA-2
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
  
    0.952
AEG60657.1
PFAM: PfkB domain protein; KEGG: tpd:Teth39_1972 ribokinase-like domain-containing protein; Belongs to the carbohydrate kinase PfkB family.
  
 0.855
AEG60549.1
KEGG: drm:Dred_1714 protein kinase; PFAM: Serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; PASTA domain containing protein.
  
  
 0.849
AEG60665.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pth:PTH_2894 dehydrogenases with different specificities.
   
 
 0.814
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
 
 
 0.756
AEG59503.1
KEGG: drm:Dred_2415 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS.
    
   0.748
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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