STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60663.1TRAP dicarboxylate transporter, DctP subunit; KEGG: gka:GK1974 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein); TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7. (344 aa)    
Predicted Functional Partners:
AEG60662.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: vap:Vapar_3328 tripartite ATP-independent periplasmic transporter DctQ component.
 
  
 0.972
AEG60661.1
KEGG: gka:GK1972 transporter; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
  
 0.964
AEG59031.1
Hypothetical protein; KEGG: nth:Nther_1893 putative transmembrane anti-sigma factor.
   
 
 0.785
AEG61418.1
KEGG: dsy:DSY4187 hypothetical protein.
   
 
 0.785
AEG60659.1
KEGG: tpd:Teth39_1975 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
 
   
 0.650
AEG61637.1
PFAM: histidine kinase HAMP region domain protein; KEGG: tjr:TherJR_1822 putative sensor with HAMP domain protein.
 
   
 0.599
AEG60660.1
KEGG: tpd:Teth39_1977 hypothetical protein.
       0.590
AEG62032.1
KEGG: oca:OCAR_6742 hypothetical protein.
  
     0.581
AEG59962.1
KEGG: dhd:Dhaf_4416 hypothetical protein.
  
     0.550
AEG62031.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: oca:OCAR_6740 integral membrane protein.
  
     0.541
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.