STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60869.1N-carbamoylputrescine amidase; KEGG: hmo:HM1_2343 hydrolase, carbon-nitrogen family, putative; TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (289 aa)    
Predicted Functional Partners:
aguA
TIGRFAM: agmatine deiminase; KEGG: hmo:HM1_2344 Agmatine deiminase. putative; PFAM: Porphyromonas-type peptidyl-arginine deiminase.
 
 0.997
AEG60315.1
KEGG: dae:Dtox_2812 agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase.
 
 0.987
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 
 0.916
speE-2
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 
 0.916
AEG60417.1
KEGG: afn:Acfer_0135 lysine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.907
AEG60059.1
Acetylornithine transaminase; KEGG: drm:Dred_2058 aminotransferase class-III; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
  0.902
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.503
AEG60871.1
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: drm:Dred_1372 hypothetical protein.
  
    0.428
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.415
AEG60872.1
PFAM: FAD linked oxidase domain protein; KEGG: adg:Adeg_0562 FAD linked oxidase domain protein.
       0.409
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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