STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG60890.1PFAM: WD40-like beta Propeller containing protein; KEGG: drm:Dred_1354 WD40 domain-containing protein. (475 aa)    
Predicted Functional Partners:
AEG60889.1
KEGG: drm:Dred_1355 hypothetical protein.
 
     0.967
AEG60887.1
KEGG: drm:Dred_1357 hypothetical protein.
 
     0.938
AEG60891.1
KEGG: drm:Dred_1353 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
 
     0.896
AEG60888.1
KEGG: drm:Dred_1356 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.827
AEG60886.1
PFAM: S-layer domain-containing protein; KEGG: drm:Dred_2917 S-layer domain-containing protein.
 
     0.782
AEG58983.1
Hypothetical protein; Manually curated; KEGG: drm:Dred_0988 hypothetical protein.
  
     0.739
AEG60940.1
PFAM: hypothetical protein; KEGG: drm:Dred_1314 hypothetical protein.
  
     0.732
AEG59904.1
KEGG: drm:Dred_2147 hypothetical protein.
 
   
 0.731
AEG59932.1
KEGG: drm:Dred_2123 type I phosphodiesterase/nucleotide pyrophosphatase.
  
     0.718
AEG58924.1
PFAM: S-layer domain-containing protein; KEGG: drm:Dred_2917 S-layer domain-containing protein.
  
     0.716
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.