STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61014.1PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: drm:Dred_1278 2-hydroxyglutaryl-CoA dehydratase, D-component. (384 aa)    
Predicted Functional Partners:
AEG61013.1
TIGRFAM: CoA-substrate-specific enzyme activase; KEGG: drm:Dred_1279 putative CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
 
 0.996
AEG59205.1
KEGG: drm:Dred_2687 putative CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
 
 0.967
AEG61060.1
KEGG: drm:Dred_1242 SirA family protein; TIGRFAM: selenium metabolism protein YedF; PFAM: SirA-like domain-containing protein; Belongs to the sulfur carrier protein TusA family.
 
    0.842
AEG61195.1
KEGG: drm:Dred_1123 putative CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type.
 
 0.666
AEG58724.1
PFAM: SirA-like domain-containing protein; KEGG: pth:PTH_0551 redox protein; Belongs to the sulfur carrier protein TusA family.
 
    0.656
AEG58725.1
KEGG: dae:Dtox_1621 hypothetical protein.
 
    0.610
AEG58720.1
KEGG: tjr:TherJR_0153 CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: Protein of unknown function DUF2229, CoA enzyme activase; ATPase BadF/BadG/BcrA/BcrD type.
 
 
 0.603
AEG59838.1
KEGG: drm:Dred_2185 selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3.
  
     0.576
asnS
KEGG: drm:Dred_1281 asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type.
       0.509
AEG58639.1
KEGG: drm:Dred_0266 cysteine desulfurase family protein; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V.
 
     0.508
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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