STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61022.1KEGG: tjr:TherJR_2100 DegV family protein; TIGRFAM: degV family protein; PFAM: DegV family protein. (278 aa)    
Predicted Functional Partners:
AEG61023.1
DAK2 domain fusion protein YloV; KEGG: drm:Dred_1271 Dak phosphatase; TIGRFAM: DAK2 domain fusion protein YloV; PFAM: Dak phosphatase.
 
 0.998
AEG61021.1
PFAM: major facilitator superfamily MFS_1; KEGG: drm:Dred_1272 major facilitator transporter.
       0.528
AEG61024.1
PFAM: Redoxin domain protein; KEGG: apv:Apar_0089 redoxin domain protein.
  
    0.433
AEG59338.1
KEGG: drm:Dred_2510 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
       0.422
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.414
AEG61020.1
PFAM: thioesterase superfamily protein; KEGG: pth:PTH_1022 hypothetical protein.
       0.401
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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