STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61023.1DAK2 domain fusion protein YloV; KEGG: drm:Dred_1271 Dak phosphatase; TIGRFAM: DAK2 domain fusion protein YloV; PFAM: Dak phosphatase. (539 aa)    
Predicted Functional Partners:
AEG61022.1
KEGG: tjr:TherJR_2100 DegV family protein; TIGRFAM: degV family protein; PFAM: DegV family protein.
 
 0.998
AEG62090.1
KEGG: drm:Dred_3318 DegV family protein; TIGRFAM: degV family protein; PFAM: DegV family protein.
 
 0.993
AEG61291.1
PFAM: protein of unknown function DUF322; KEGG: drm:Dred_1066 hypothetical protein.
 
  
 0.608
AEG61290.1
PFAM: protein of unknown function DUF322; KEGG: drm:Dred_1067 hypothetical protein.
  
  
 0.509
AEG61273.1
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
    0.503
glmU
UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.
   
    0.499
AEG61021.1
PFAM: major facilitator superfamily MFS_1; KEGG: drm:Dred_1272 major facilitator transporter.
       0.494
polC
DNA polymerase III, alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
     0.475
AEG61024.1
PFAM: Redoxin domain protein; KEGG: apv:Apar_0089 redoxin domain protein.
       0.446
AEG60549.1
KEGG: drm:Dred_1714 protein kinase; PFAM: Serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; PASTA domain containing protein.
 
    0.437
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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