STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61087.1PFAM: protein of unknown function DUF6 transmembrane; KEGG: dae:Dtox_3977 protein of unknown function DUF6 transmembrane. (139 aa)    
Predicted Functional Partners:
AEG61972.1
KEGG: dae:Dtox_2491 Flp pilus assembly protein CpaB; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein.
  
     0.609
AEG58747.1
KEGG: dae:Dtox_2669 hypothetical protein.
  
     0.575
AEG61088.1
PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: drm:Dred_1815 Orn/Lys/Arg decarboxylase, major region.
       0.570
AEG58804.1
PFAM: GCN5-related N-acetyltransferase; KEGG: dae:Dtox_4297 GCN5-related N-acetyltransferase.
  
     0.504
AEG61987.1
KEGG: dae:Dtox_2503 chromosome partitioning ATPase-like protein.
  
     0.502
AEG59576.1
PFAM: S-layer domain-containing protein; KEGG: drm:Dred_2344 S-layer domain-containing protein.
  
     0.483
AEG59499.1
KEGG: dae:Dtox_0663 hypothetical protein.
  
     0.467
AEG60404.1
KEGG: dae:Dtox_0339 hypothetical protein.
  
     0.460
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.416
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.