STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61181.1Manually curated; TIGRFAM: sporulation protein YtfJ; KEGG: drm:Dred_1138 hypothetical protein; PFAM: Sporulation protein YtfJ. (127 aa)    
Predicted Functional Partners:
AEG61182.1
KEGG: drm:Dred_1137 hypothetical protein.
 
    0.952
AEG60667.1
Sporulation protein YunB; KEGG: drm:Dred_1648 hypothetical protein; TIGRFAM: sporulation protein YunB; PFAM: Sporulation protein YunB-like.
  
   
 0.746
AEG61537.1
Sporulation protein, YlmC/YmxH family; KEGG: drm:Dred_0688 PRC-barrel domain-containing protein; TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein.
  
  
 0.734
AEG59989.1
Sporulation integral membrane protein YlbJ; KEGG: drm:Dred_2080 nucleoside recognition domain-containing protein; TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein.
  
    0.733
AEG61843.1
Sporulation protein, YlmC/YmxH family; KEGG: drm:Dred_3097 PRC-barrel domain-containing protein; TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein.
  
  
 0.725
AEG60600.1
KEGG: dae:Dtox_0584 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
     0.714
AEG61883.1
TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: drm:Dred_3145 regulatory protein, DeoR.
  
  
 0.713
AEG61272.1
TIGRFAM: stage IV sporulation protein B; KEGG: drm:Dred_1085 peptidase S55, SpoIVB; PFAM: peptidase S55 SpoIVB.
  
    0.712
AEG60414.1
KEGG: pth:PTH_1838 hypothetical protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
     0.698
AEG60598.1
KEGG: adg:Adeg_0296 spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
  
    0.698
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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