STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61192.1KEGG: drm:Dred_1124 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold. (720 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.874
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.863
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.852
AEG59010.1
KEGG: drm:Dred_2907 hypothetical protein.
   
 0.703
AEG60470.1
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: drm:Dred_1753 TPR repeat-containing protein.
   
 0.703
AEG60491.1
KEGG: drm:Dred_2642 hypothetical protein.
   
 0.703
AEG60900.1
Polysaccharide deacetylase; KEGG: mar:MAE_03610 TPR repeat-containing protein; PFAM: polysaccharide deacetylase; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.
  
 0.703
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
      
 0.534
AEG58671.1
KEGG: pde:Pden_3841 helicase domain-containing protein; PFAM: helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
  
 
 0.531
AEG59359.1
SMART: DEAD-like helicase; KEGG: ccb:Clocel_0764 SNF2-related protein.
  
 
 0.531
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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