STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61228.1KEGG: drm:Dred_1108 SpoVA protein; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein. (117 aa)    
Predicted Functional Partners:
AEG61229.1
Manually curated; TIGRFAM: stage V sporulation protein AD; KEGG: drm:Dred_1107 stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
 
  
 0.963
AEG61226.1
PFAM: GerA spore germination protein; KEGG: drm:Dred_1110 GerA spore germination protein.
 
   
 0.956
AEG61230.1
KEGG: drm:Dred_1106 SpoVA protein; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein.
 
  
 0.955
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
     0.894
AEG61231.1
RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.888
AEG60805.1
KEGG: drm:Dred_1464 stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
 
  
 0.855
AEG61227.1
KEGG: drm:Dred_1109 stage V sporulation protein AE, C-terminal region.
     
 0.830
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.785
AEG61233.1
KEGG: drm:Dred_1103 anti-sigma-factor antagonist; TIGRFAM: anti-sigma F factor antagonist; anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
 
     0.785
AEG58482.1
Stage V sporulation protein T; KEGG: drm:Dred_0113 AbrB family transcriptional regulator; TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein.
  
    0.780
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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