STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61399.1KEGG: clj:CLJU_c15710 hypothetical protein. (301 aa)    
Predicted Functional Partners:
AEG58787.1
PFAM: protein of unknown function DUF214; KEGG: cdl:CDR20291_0863 hypothetical protein.
   
 
 0.823
AEG61398.1
KEGG: bbe:BBR47_46000 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
  
    0.800
AEG58788.1
KEGG: cdl:CDR20291_0862 predicted abc transporter, atpase component; PFAM: ABC transporter related; SMART: AAA ATPase.
   
 
 0.474
AEG58907.1
KEGG: dae:Dtox_1572 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
   
 
 0.474
AEG59214.1
Manually curated; PFAM: ABC transporter related; KEGG: drm:Dred_0318 ABC transporter related; SMART: AAA ATPase.
   
 
 0.474
AEG59777.1
KEGG: drm:Dred_0318 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
   
 
 0.474
AEG60777.1
KEGG: bbe:BBR47_15070 probable ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
   
 
 0.474
AEG60913.1
KEGG: dhd:Dhaf_2148 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
   
 
 0.474
AEG61451.1
PFAM: ABC transporter related; KEGG: dae:Dtox_2874 ABC transporter related.
   
 
 0.474
AEG59916.1
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; response regulator receiver; Hpt domain protein; KEGG: drm:Dred_2145 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
   
 
 0.470
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.