STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61441.1Ferroxidase; Iron-storage protein. (171 aa)    
Predicted Functional Partners:
AEG61442.1
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dae:Dtox_1563 rubredoxin-type Fe(Cys)4 protein.
  
    0.652
AEG60797.1
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.642
rplP
Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
   
   0.605
rpsP
KEGG: drm:Dred_2055 ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
    0.526
rpmC
KEGG: drm:Dred_0223 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
   0.505
AEG61438.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dae:Dtox_2281 binding-protein-dependent transport systems inner membrane component.
       0.446
AEG61439.1
KEGG: mta:Moth_0098 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.446
AEG61440.1
SMART: extracellular solute-binding protein family 3; KEGG: adg:Adeg_0354 NMT1/THI5 like domain protein.
       0.446
AEG61527.1
PFAM: Carboxymuconolactone decarboxylase; KEGG: mpl:Mpal_0999 carboxymuconolactone decarboxylase.
 
    0.431
AEG58898.1
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: drm:Dred_2941 rubredoxin-type Fe(Cys)4 protein.
  
    0.404
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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