STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61496.1KEGG: dae:Dtox_1824 hypothetical protein. (237 aa)    
Predicted Functional Partners:
AEG59630.1
PFAM: lipolytic protein G-D-S-L family; KEGG: drm:Dred_2310 GDSL family lipase.
  
 
 0.638
AEG59916.1
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; response regulator receiver; Hpt domain protein; KEGG: drm:Dred_2145 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
  
  
 0.633
AEG59698.1
PFAM: lipolytic protein G-D-S-L family; KEGG: amt:Amet_1979 GDSL family lipase.
   
 
 0.566
AEG61862.1
PFAM: lipolytic protein G-D-S-L family; copper amine oxidase-like domain-containing protein; KEGG: clj:CLJU_c08400 putative SGNH hydrolase.
   
 
 0.566
AEG58450.1
PFAM: SCP-like extracellular; KEGG: drm:Dred_0081 allergen V5/TPX-1 family protein.
   
    0.479
AEG59193.1
PFAM: SCP-like extracellular; KEGG: drm:Dred_1374 allergen V5/TPX-1 family protein.
   
    0.479
AEG61746.1
TIGRFAM: phage major tail protein, phi13 family; KEGG: clj:CLJU_c03640 phage protein.
   
    0.479
AEG61495.1
KEGG: mba:Mbar_A1826 hypothetical protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein.
  
    0.443
AEG61336.1
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; KEGG: dae:Dtox_0050 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; histidine kinase A domain protein.
     
 0.426
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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