STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61501.1PFAM: VanW family protein; KEGG: dhd:Dhaf_1773 VanW family protein. (280 aa)    
Predicted Functional Partners:
AEG61502.1
Hypothetical protein; Manually curated; KEGG: cpc:Cpar_1201 hypothetical protein.
       0.655
AEG61500.1
PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi02771 hypothetical protein.
 
     0.616
AEG61504.1
PFAM: regulatory protein TetR; KEGG: dae:Dtox_2650 transcriptional regulator, TetR family.
 
     0.467
AEG60414.1
KEGG: pth:PTH_1838 hypothetical protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
     0.410
AEG60981.1
S-layer domain-containing protein; KEGG: pjd:Pjdr2_0886 cell wall/surface repeat protein; PFAM: S-layer domain-containing protein; Fibronectin type III domain protein; SMART: Immunoglobulin subtype; Immunoglobulin C2 type; Fibronectin type III domain protein.
  
     0.405
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.