STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61528.1KEGG: dau:Daud_0161 hypothetical protein. (85 aa)    
Predicted Functional Partners:
AEG59978.1
PFAM: transport system permease protein; KEGG: dae:Dtox_0485 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.939
AEG58911.1
KEGG: drm:Dred_2923 hypothetical protein.
  
 
 0.825
AEG59977.1
PFAM: periplasmic binding protein; KEGG: dsy:DSY0390 hypothetical protein.
  
 
 0.825
AEG59898.1
KEGG: drm:Dred_2152 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related.
 
   
 0.824
AEG59899.1
Radical SAM domain protein; KEGG: drm:Dred_2151 biotin synthase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
  
 0.782
AEG60484.1
PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: drm:Dred_2150 thiamine biosynthesis protein ThiH.
 
   
 0.681
AEG59900.1
PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: drm:Dred_2150 thiamine biosynthesis protein ThiH.
 
   
 0.674
AEG61527.1
PFAM: Carboxymuconolactone decarboxylase; KEGG: mpl:Mpal_0999 carboxymuconolactone decarboxylase.
       0.578
AEG61529.1
PFAM: nitrite and sulphite reductase 4Fe-4S region; KEGG: drm:Dred_0697 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
       0.431
AEG60740.1
PAS fold domain protein; KEGG: drm:Dred_1585 putative PAS/PAC sensor protein; PFAM: PAS fold domain protein; Fe-S cluster domain protein; SMART: PAS domain containing protein.
  
     0.408
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.