STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61592.1PFAM: peptidase U32; KEGG: dhd:Dhaf_0684 peptidase U32. (328 aa)    
Predicted Functional Partners:
AEG61593.1
KEGG: dsy:DSY0724 hypothetical protein.
 
     0.918
AEG60825.1
PFAM: O-methyltransferase family 3; KEGG: drm:Dred_1444 O-methyltransferase family protein.
  
  
 0.671
AEG59394.1
KEGG: cyp:PCC8801_2037 hypothetical protein.
  
  
 0.510
AEG61591.1
KEGG: drm:Dred_1805 hypothetical protein.
       0.498
AEG58393.1
SMART: AAA ATPase; KEGG: drm:Dred_0041 phosphoribulokinase/uridine kinase.
  
    0.457
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.