STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61602.1PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: dae:Dtox_0338 cobalamin synthesis protein P47K. (346 aa)    
Predicted Functional Partners:
AEG61603.1
PFAM: periplasmic solute binding protein; KEGG: drm:Dred_2645 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.888
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.692
AEG58443.1
PFAM: periplasmic solute binding protein; KEGG: dhd:Dhaf_0030 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.625
AEG60566.1
TIGRFAM: sporulation protein, yteA family; KEGG: drm:Dred_1697 TraR/DksA family transcriptional regulator.
  
  
 0.622
rpmB
KEGG: drm:Dred_2089 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.594
hisI
phosphoribosyl-ATP diphosphatase; KEGG: drm:Dred_2349 phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like; In the N-terminal section; belongs to the PRA-CH family.
     
 0.587
AEG59783.1
PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: dhd:Dhaf_0196 uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
 
  
 0.548
AEG60404.1
KEGG: dae:Dtox_0339 hypothetical protein.
 
     0.546
rpmG
Ribosomal protein L33; Manually curated; TIGRFAM: ribosomal protein L33; KEGG: drm:Dred_0200 50S ribosomal protein L33; PFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.505
AEG60402.1
PFAM: permease; KEGG: dae:Dtox_0336 permease.
    0.495
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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