STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61629.1PFAM: membrane protein of unknown function; KEGG: drm:Dred_0469 membrane protein of unknown function. (113 aa)    
Predicted Functional Partners:
AEG60915.1
PFAM: PspC domain protein; KEGG: drm:Dred_1339 phage shock protein C, PspC.
  
    0.730
AEG61627.1
KEGG: hya:HY04AAS1_1261 hypothetical protein.
       0.532
AEG61628.1
KEGG: ptm:GSPATT00013167001 hypothetical protein.
       0.532
AEG61626.1
KEGG: drm:Dred_0470 hypothetical protein.
       0.457
AEG61630.1
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: drm:Dred_0468 small acid-soluble spore protein, alpha/beta type.
  
    0.438
hisI
phosphoribosyl-ATP diphosphatase; KEGG: drm:Dred_2349 phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like; In the N-terminal section; belongs to the PRA-CH family.
       0.402
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.