STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61722.1PFAM: protein of unknown function DUF324; KEGG: cth:Cthe_3212 hypothetical protein. (445 aa)    
Predicted Functional Partners:
AEG61725.1
KEGG: cbb:CLD_2403 hypothetical protein.
 
 
 0.993
AEG61720.1
KEGG: cth:Cthe_3214 hypothetical protein.
 
   
 0.965
AEG61724.1
PFAM: protein of unknown function DUF324; KEGG: cth:Cthe_3210 hypothetical protein.
 
     0.964
AEG61723.1
PFAM: protein of unknown function DUF324; KEGG: cth:Cthe_3211 hypothetical protein.
 
     0.955
AEG59452.1
PFAM: protein of unknown function DUF324; KEGG: rca:Rcas_4238 hypothetical protein.
  
 
 0.917
AEG61726.1
KEGG: pct:PC1_3262 hypothetical protein.
       0.805
AEG61721.1
KEGG: cth:Cthe_3213 hypothetical protein.
  
    0.795
AEG61214.1
CRISPR-associated protein Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
 
   
 0.433
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.