STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61733.1PFAM: Resolvase domain; Recombinase; KEGG: ccb:Clocel_0846 resolvase domain. (436 aa)    
Predicted Functional Partners:
AEG61734.1
KEGG: ccb:Clocel_0844 hypothetical protein.
 
     0.849
AEG61762.1
KEGG: hmo:HM1_2946 DNA methylase; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.811
AEG61732.1
PFAM: Resolvase domain; Recombinase; KEGG: ccb:Clocel_0847 resolvase domain.
 
    
0.808
AEG61763.1
KEGG: hmo:HM1_2945 hypothetical protein.
 
    0.778
AEG61752.1
TIGRFAM: phage major capsid protein, HK97 family; KEGG: hmo:HM1_2880 phage major capsid protein, hk97 family.
 
  
 0.770
AEG61761.1
KEGG: hmo:HM1_2948 hypothetical protein.
 
   
 0.769
AEG61736.1
KEGG: cce:Ccel_2819 toxin secretion/phage lysis holin; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis.
 
  
 0.757
AEG61760.1
KEGG: thx:Thet_1662 hypothetical protein.
 
    0.746
AEG61756.1
Terminase; KEGG: ckr:CKR_2343 hypothetical protein; manually curated; PFAM: Terminase.
 
     0.729
AEG61754.1
KEGG: bse:Bsel_3007 phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
 
   
 0.714
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.