STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61770.1PFAM: virulence-associated E family protein; KEGG: thx:Thet_1672 virulence-associated E family protein. (783 aa)    
Predicted Functional Partners:
AEG61773.1
KEGG: thx:Thet_1675 DNA-directed DNA polymerase; PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase.
 
     0.893
AEG61776.1
KEGG: thx:Thet_1677 hypothetical protein.
 
     0.890
AEG61775.1
KEGG: thx:Thet_1676 hypothetical protein.
 
     0.883
AEG61769.1
PFAM: VRR-NUC domain-containing protein; KEGG: amt:Amet_4048 VRR_NUC domain-containing protein.
 
     0.856
AEG61777.1
KEGG: thx:Thet_1678 rRNA biogenesis protein rrp5.
 
     0.842
AEG61771.1
KEGG: hmo:HM1_2897 hypothetical protein.
 
     0.841
AEG61768.1
SNF2-related protein; KEGG: hmo:HM1_2943 phage-associated helicase, SNF2 family; PFAM: SNF2-related protein; SMART: DEAD-like helicase.
 
     0.830
AEG61772.1
PFAM: phage antirepressor protein; BRO domain protein; KEGG: clj:CLJU_c03400 putative prophage antirepressor.
       0.788
AEG59352.1
KEGG: drm:Dred_1191 DNA-directed DNA polymerase; PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase.
 
     0.783
AEG59350.1
KEGG: drm:Dred_1188 hypothetical protein.
 
     0.778
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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