STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG61774.1PFAM: NUMOD4 domain protein; HNH endonuclease; KEGG: cce:Ccel_2857 HNH endonuclease. (192 aa)    
Predicted Functional Partners:
AEG61778.1
KEGG: bca:BCE_0373 hypothetical protein.
 
     0.858
AEG61777.1
KEGG: thx:Thet_1678 rRNA biogenesis protein rrp5.
 
     0.840
AEG61773.1
KEGG: thx:Thet_1675 DNA-directed DNA polymerase; PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase.
       0.786
AEG61775.1
KEGG: thx:Thet_1676 hypothetical protein.
       0.780
AEG61776.1
KEGG: thx:Thet_1677 hypothetical protein.
       0.780
AEG61772.1
PFAM: phage antirepressor protein; BRO domain protein; KEGG: clj:CLJU_c03400 putative prophage antirepressor.
 
     0.617
AEG61779.1
PFAM: Sigma-70 region 4 type 2; KEGG: mcu:HMPREF0573_11266 hypothetical protein.
       0.554
AEG61770.1
PFAM: virulence-associated E family protein; KEGG: thx:Thet_1672 virulence-associated E family protein.
       0.545
AEG61771.1
KEGG: hmo:HM1_2897 hypothetical protein.
       0.542
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.