STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
whiAProtein of unknown function DUF199; Involved in cell division and chromosome segregation. (324 aa)    
Predicted Functional Partners:
AEG61806.1
Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
  
 0.851
AEG61803.1
KEGG: drm:Dred_2993 beta-lactamase domain-containing protein.
       0.813
AEG61807.1
Hypothetical protein; Displays ATPase and GTPase activities.
 
  
 0.743
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.736
AEG59671.1
RNA methyltransferase, TrmA family; KEGG: drm:Dred_2261 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
   
 0.714
AEG60060.1
Helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
  
 0.709
AEG61802.1
KEGG: drm:Dred_2992 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor.
       0.707
AEG60551.1
PFAM: cell cycle protein; KEGG: drm:Dred_1712 cell cycle protein; Belongs to the SEDS family.
 
  
 0.602
AEG61368.1
PFAM: protein of unknown function DUF965; KEGG: drm:Dred_0773 hypothetical protein; Belongs to the UPF0297 family.
  
     0.590
AEG59456.1
PFAM: protein of unknown function DUF633; KEGG: drm:Dred_2460 hypothetical protein.
  
     0.578
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.