STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG62026.1PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aoe:Clos_2355 glyoxalase/bleomycin resistance protein/dioxygenase. (123 aa)    
Predicted Functional Partners:
AEG61474.1
KEGG: drm:Dred_0735 beta-lactamase domain-containing protein.
   
 
  0.902
AEG58465.1
KEGG: drm:Dred_0097 threonine dehydratase; TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein.
     
 0.811
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
  0.800
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
  0.800
AEG61044.1
TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; KEGG: drm:Dred_1253 L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain.
     
  0.800
AEG61045.1
TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; KEGG: drm:Dred_1252 L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: serine dehydratase beta chain; amino acid-binding ACT domain protein.
     
  0.800
AEG62027.1
KEGG: dsy:DSY4988 hypothetical protein.
       0.605
AEG62029.1
Regulatory protein LuxR; KEGG: bbe:BBR47_29850 probable transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
 
    0.485
AEG62025.1
Regulatory protein LacI; KEGG: str:Sterm_3542 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
       0.449
AEG62028.1
TIGRFAM: diguanylate cyclase; PFAM: 5TM Receptors of the LytS-YhcK type transmembrane region; GGDEF domain containing protein; KEGG: vvy:VV0692 putative regulator of cell autolysis; SMART: GGDEF domain containing protein.
       0.413
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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