STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG62046.1KEGG: drm:Dred_3243 regulatory protein GntR, HTH; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH. (129 aa)    
Predicted Functional Partners:
AEG62044.1
KEGG: drm:Dred_3241 hypothetical protein.
 
  
 0.966
AEG62045.1
KEGG: drm:Dred_3242 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.953
AEG61095.1
KEGG: drm:Dred_1514 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.479
AEG62048.1
KEGG: amt:Amet_4250 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein.
  
    0.451
AEG62047.1
KEGG: dhd:Dhaf_3597 hypothetical protein.
       0.440
AEG61453.1
KEGG: drm:Dred_1506 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
    0.419
AEG62043.1
KEGG: bbe:BBR47_48290 hypothetical protein.
       0.414
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.